Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015947571.1_cds_XP_016489209.1_79758
CDS Infomation

[gene=LOC107809124] [db_xref=GeneID:107809124] [protein=putative lysine-specific demethylase JMJD5] [protein_id=XP_016489209.1] [location=join(13534..14031,15607..15816,16203..16337,16443..16586,16777..16869,17416..17592)] [gbkey=CDS]
Sequence

ATGTCCACGTCAGCCATTGACGTCGCCGGCGAAGCCACCGGTTCCGACGACGGCGTTCTA
GAAACTCCGTTTCTCGACGCGGAACGCTCCAATCTCCTTCAGCTGATAGCCGAGGAAGGC
GGCTACGCGTACGTTAGCATGGCGACACTCGCAGCCGCCGGAGATATTCGAGCGGCGGAG
GCGGCGAAGGAGATGGCATGGGAACAGTTACACTCAGGTCCATGGCATTCGGTTGTGCCT
ATATGGAGAGATGCGTATTCCATGGCGTGTGTTCACTTGGCGAAACTTCATTATGCTTCC
GGTGAGATTACTCAGGCGATTAGAGCACTTGATATGGGCCTTATTATGGGAGGAATGACG
CTTAGAGATGAGCTGAACCTCGCAATCAAAAAGGCGTCGAAGAAAGCGCGGAGTGTGCTG
TTTGCTTCCTCGGAAAATGGAGGCGAAAAAGGTGAATCCGAGATTAAATTTGTTTCTCAA
GAAATTAACGTGGCGGAGGTGCAGCAGTTTTTACCTATTAAGTCACTGTCTTGTAAGATA
GTAGGGAAAAGGTCAGCCTTATCGTTGGAGGTATTCCTGAGAGATCATTATTTGTCAGGA
ATCCCGGTGGTAATCAGAGATTCCATGGATCACTGGCCTGCCAAGAATAAGTGGAACGAC
ATGAATTACCTTAGAAGGGTTGCTGGCTTCCGTACAGTTCCTGTTGAGGTCGGAAAGAAC
TATTTGTGCCCAGAATGGAAGCAAGAGCTGATCACATTCTCTGAATTTCTTGAGAGAATC
TGGTCCAATGATGCTACCTCTGTGGAAACTACTTACTTGGCTCAGCATCAATTATTTGAT
CAGATACAAGAACTACGACAAGATATTGTTATTCCTGATTATTGTTTTACTGGAGGTGGG
GAGATCAGGTCGCTTAATGCTTGGTTTGGTCCAGCGGGGACTGTGACGCCTTTGCATCAT
GATCCTCACCATAATATACTTGCTCAGGTTGTTGGCAAAAAGTATGTACGGCTTTACCCA
GCATCACTTTCGGATGAGCTTCACCCACATAGTGAAACCATGCTTAGCAATTCCAGCCAG
GTTGATCTAGACAACATTGATGAGAAAGAGTTCCCGAAGATATTAGACCTGGAGTTTCAG
GACTGCATTTTAGAGGAAGGTGAGATGCTTTACATCCCCCCTAAATGGTGGCACTACGTC
CGCTCTCTCACGACAAGCTTTTCAGTTAGCTTTTGGTGGAGTGGCGCTGAAAATTAG

Peptide Sequence

PEP ID

XP_016489209.1
PEP Infomation

PREDICTED: putative lysine-specific demethylase JMJD5 [Nicotiana tabacum]
Sequence

MSTSAIDVAGEATGSDDGVLETPFLDAERSNLLQLIAEEGGYAYVSMATLAAAGDIRAAE
AAKEMAWEQLHSGPWHSVVPIWRDAYSMACVHLAKLHYASGEITQAIRALDMGLIMGGMT
LRDELNLAIKKASKKARSVLFASSENGGEKGESEIKFVSQEINVAEVQQFLPIKSLSCKI
VGKRSALSLEVFLRDHYLSGIPVVIRDSMDHWPAKNKWNDMNYLRRVAGFRTVPVEVGKN
YLCPEWKQELITFSEFLERIWSNDATSVETTYLAQHQLFDQIQELRQDIVIPDYCFTGGG
EIRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYVRLYPASLSDELHPHSETMLSNSSQ
VDLDNIDEKEFPKILDLEFQDCILEEGEMLYIPPKWWHYVRSLTTSFSVSFWWSGAEN

Transcript Sequence

Gene sequence data has not been registered.